My Honours thesis, Numerical Modelling for Microwave-Optical Transduction and Photon Pair Generation using Atomic Ensembles, can be viewed or downloaded here: MariaNicolaeHonoursThesis.pdf.
My thesis is built partially reproducibly, with figures generated programmatically and/or from data. Download the source here: MariaNicolaeHonoursThesis.zip. Alternatively, my thesis and its source are hosted on the Quantum Integration Laboratory's GitHub page.